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* sci-biology/emboss: Fix compilation problem with toplplot, #391669, thanks ↵Justin Lecher2012-11-191-18/+20
| | | | | | Juergen Rose for the patch (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/emboss: Fix compilation problem with toplplot, #391669, thanks ↵Justin Lecher2012-11-193-1/+237
| | | | | | Juergen Rose for the patch (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpaths: Block sci-biology/allpathslg due to file collision, ↵Justin Lecher2012-11-191-7/+7
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpaths: Block sci-biology/allpathslg due to file collision, ↵Justin Lecher2012-11-194-8/+17
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpathslg: Block sci-biology/allpaths due to file collision, ↵Justin Lecher2012-11-191-9/+8
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpathslg: Block sci-biology/allpaths due to file collision, ↵Justin Lecher2012-11-194-11/+18
| | | | | | #443740 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* x86 stable, see bug 328437Andreas Schuerch2012-11-131-2/+12
| | | | (Portage version: 2.1.11.9/cvs/Linux i686, signed Manifest commit with key C1DE54B2)
* x86 stable, see bug 328437Andreas Schuerch2012-11-132-3/+7
| | | | (Portage version: 2.1.11.9/cvs/Linux i686)
* Stable for amd64, wrt bug #328437Agostino Sarubbo2012-11-111-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #328437Agostino Sarubbo2012-11-112-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #441020Agostino Sarubbo2012-11-101-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #441020Agostino Sarubbo2012-11-102-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/wgs-assembler: Respect LDFLAGS, #331935; fix linking with gold; ↵Justin Lecher2012-11-101-13/+15
| | | | | | handle static-libs (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/wgs-assembler: Respect LDFLAGS, #331935; fix linking with gold; ↵Justin Lecher2012-11-106-9/+320
| | | | | | handle static-libs (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Update ChangeLogJustin Lecher2012-11-101-4/+4
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Update ChangeLogJustin Lecher2012-11-101-2/+2
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/cufflinks: Drop hard version dep for boost, #440630, and fix ↵Justin Lecher2012-11-101-9/+8
| | | | | | compatibility with version 1.5*; Fix gcc-4.7 problems (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/cufflinks: Drop hard version dep for boost, #440630, and fix ↵Justin Lecher2012-11-105-19/+1404
| | | | | | compatibility with version 1.5*; Fix gcc-4.7 problems (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/express: Keyworded for ~x86; drop needless version restriction ↵Justin Lecher2012-11-091-9/+5
| | | | | | of boost, #440634 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/express: Keyworded for ~x86; drop needless version restriction ↵Justin Lecher2012-11-092-7/+12
| | | | | | of boost, #440634 (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/qrna: Move to EAPI=4Justin Lecher2012-11-091-13/+13
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/qrna: Move to EAPI=4Justin Lecher2012-11-092-31/+31
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpaths: Fix for latest boost, #421727; fix for additional ↵Justin Lecher2012-11-081-7/+10
| | | | | | problem with gcc-4.7; enable openmp support; Respect LDFALGS and CFLAGS everywhere; make it gold resistant (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/allpaths: Fix for latest boost, #421727; fix for additional ↵Justin Lecher2012-11-086-15/+652
| | | | | | problem with gcc-4.7; enable openmp support; Respect LDFALGS and CFLAGS everywhere; make it gold resistant (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mira: Version Bump, #377807Justin Lecher2012-11-071-6/+10
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mira: Version Bump, #377807Justin Lecher2012-11-075-5/+97
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mira: Fix for boost >1.50, #425468Justin Lecher2012-11-071-9/+10
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mira: Fix for boost >1.50, #425468Justin Lecher2012-11-074-7/+128
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools++: Correct patch naming againJustin Lecher2012-11-051-7/+6
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools++: Correct patch naming againJustin Lecher2012-11-052-8/+12
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools++: Correct for new version numberJustin Lecher2012-11-031-5/+5
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools++: Correct for new version numberJustin Lecher2012-11-032-8/+12
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bioperl-run: Dropped oldJustin Lecher2012-11-021-14/+12
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bioperl-run: Dropped oldJustin Lecher2012-11-022-50/+4
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools++: Drop old, duplicate with lower version number for ↵Justin Lecher2012-11-021-16/+16
| | | | | | new versioning schema (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools++: Drop old, duplicate with lower version number for ↵Justin Lecher2012-11-022-7/+23
| | | | | | new versioning schema (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* QA: drop maximum boost version dep; if it fails to build, it has to be fixed.Diego Elio Pettenò2012-10-311-9/+13
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 1CD13C8AD4301342)
* QA: drop maximum boost version dep; if it fails to build, it has to be fixed.Diego Elio Pettenò2012-10-312-6/+8
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 1CD13C8AD4301342)
* Avoid using a slot depend since now boost is unslotted.Diego Elio Pettenò2012-10-311-9/+13
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 1CD13C8AD4301342)
* Avoid using a slot depend since now boost is unslotted.Diego Elio Pettenò2012-10-312-4/+6
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 1CD13C8AD4301342)
* Avoid using a slot depend since now boost is unslotted; remove pointless ↵Diego Elio Pettenò2012-10-311-9/+13
| | | | | | filter-ldflags for --as-needed. (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 1CD13C8AD4301342)
* Avoid using a slot depend since now boost is unslotted; remove pointless ↵Diego Elio Pettenò2012-10-312-6/+8
| | | | | | filter-ldflags for --as-needed. (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 1CD13C8AD4301342)
* sci-biology/bioperl: Drop versions with unsolvable dep setsJustin Lecher2012-10-281-15/+11
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bioperl: Drop versions with unsolvable dep setsJustin Lecher2012-10-283-129/+5
| | | | (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-241-22/+31
| | | | (Portage version: 2.1.11.30/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-246-12/+18
| | | | (Portage version: 2.1.11.30/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-241-11/+21
| | | | (Portage version: 2.1.11.30/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-243-8/+13
| | | | (Portage version: 2.1.11.30/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-241-11/+20
| | | | (Portage version: 2.1.11.30/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update dependency after package move from x11-libs/openmotif to x11-libs/motif.Ulrich Müller2012-10-242-3/+7
| | | | (Portage version: 2.1.11.30/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)