Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-biology
Commit message (Collapse)AuthorAgeFilesLines
* sci-biology/biopython: Keyword ~-linuxJustin Lecher2013-06-061-6/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Keyword ~-linuxJustin Lecher2013-06-062-3/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Update to new upstream tarballJustin Lecher2013-06-061-7/+7
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Update to new upstream tarballJustin Lecher2013-06-061-1/+4
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-06-061-4/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-06-062-1/+67
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vaal: Version BUmpJustin Lecher2013-06-021-6/+8
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vaal: Version BUmpJustin Lecher2013-06-022-1/+48
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-291-7/+7
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-292-3/+10
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-291-6/+6
| | | | | | PYTHON_REQUIRED_USE) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-292-2/+7
| | | | | | PYTHON_REQUIRED_USE) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/seqan: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-291-6/+6
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/seqan: Fix usage of new python r1 eclasses (missing ↵Justin Lecher2013-05-292-3/+9
| | | | | | PYTHON_REQUIRED_USE, PYTHON_DEPS) (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Use append-cppflags for preprocessor flagsJustin Lecher2013-05-261-5/+5
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Use append-cppflags for preprocessor flagsJustin Lecher2013-05-262-3/+6
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version Bump, add test functionJustin Lecher2013-05-261-5/+7
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version Bump, add test functionJustin Lecher2013-05-263-2/+86
| | | | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BUmp, drop unnecessary dieJustin Lecher2013-05-211-6/+8
| | | | (Portage version: 2.2.0_alpha176/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BUmp, drop unnecessary dieJustin Lecher2013-05-213-7/+56
| | | | (Portage version: 2.2.0_alpha176/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* showing special permission during pkg_setup so that we 'display this notice.'Ian Stakenvicius2013-05-131-5/+5
| | | | (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* showing special permission during pkg_setup so that we 'display this notice.'Ian Stakenvicius2013-05-132-2/+8
| | | | (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* put back mirror restriction (was too excited about dropping fetch, forgot to ↵Ian Stakenvicius2013-05-131-5/+5
| | | | | | re-add) (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* put back mirror restriction (was too excited about dropping fetch, forgot to ↵Ian Stakenvicius2013-05-132-3/+7
| | | | | | re-add) (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* Dropped fetch restriction and amended license, as Gentoo has been granted ↵Ian Stakenvicius2013-05-131-5/+5
| | | | | | special permissions (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* Dropped fetch restriction and amended license, as Gentoo has been granted ↵Ian Stakenvicius2013-05-132-4/+8
| | | | | | special permissions (Portage version: 2.1.11.62/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* sci-biology/fasta: Version BUmpJustin Lecher2013-05-111-4/+7
| | | | (Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/fasta: Version BUmpJustin Lecher2013-05-113-2/+161
| | | | (Portage version: 2.2.0_alpha174/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Fix USE=threads make flag magicJustin Lecher2013-04-291-5/+5
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Fix USE=threads make flag magicJustin Lecher2013-04-292-3/+6
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-04-291-14/+17
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mafft: Version BumpJustin Lecher2013-04-294-3/+271
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Version BumpJustin Lecher2013-04-261-16/+8
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/biopython: Version BumpJustin Lecher2013-04-263-3/+61
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/clustal-omega: Version BUmpJustin Lecher2013-04-261-6/+8
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/clustal-omega: Version BUmpJustin Lecher2013-04-262-1/+36
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/profphd: Updated depsJustin Lecher2013-04-241-6/+6
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/profphd: Updated depsJustin Lecher2013-04-242-4/+11
| | | | (Portage version: 2.2.0_alpha173/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* restricted strip as technically that modifies the binaries, and we want to ↵Ian Stakenvicius2013-04-201-5/+5
| | | | | | be as safe as possible wrt to the EULA (Portage version: 2.1.11.55/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* restricted strip as technically that modifies the binaries, and we want to ↵Ian Stakenvicius2013-04-202-3/+10
| | | | | | be as safe as possible wrt to the EULA (Portage version: 2.1.11.55/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* minor fixes to conf.d and init.d filesIan Stakenvicius2013-04-161-4/+14
| | | | (Portage version: 2.1.11.55/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* minor fixes to conf.d and init.d filesIan Stakenvicius2013-04-164-4/+13
| | | | (Portage version: 2.1.11.55/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* fixing the commit that partially failed, againIan Stakenvicius2013-04-161-28/+8
|
* fixing the commit that partially failedIan Stakenvicius2013-04-163-0/+42
|
* version bump, remove old; updated license and added RESTRICT as per license ↵Ian Stakenvicius2013-04-168-183/+95
| | | | | | requirements, also added 32bit variant (Portage version: 2.1.11.55/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
* sci-biology/stride: Fix license, thanks ulm looking for correct licensingJustin Lecher2013-04-141-16/+12
| | | | (Portage version: 2.2.0_alpha171/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/stride: Fix license, thanks ulm looking for correct licensingJustin Lecher2013-04-144-9/+17
| | | | (Portage version: 2.2.0_alpha171/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Fix LICENSE, see README and notices in source files.Ulrich Müller2013-04-111-12/+18
| | | | (Portage version: 2.1.11.60/cvs/Linux x86_64, signed Manifest commit with key 9433907D693FB5B8!)
* Fix LICENSE, see README and notices in source files.Ulrich Müller2013-04-113-10/+14
| | | | (Portage version: 2.1.11.60/cvs/Linux x86_64, signed Manifest commit with key 9433907D693FB5B8!)
* sci-biology/samtools: Install bcftools and vcfutils.pl pointed out by mahnmutJustin Lecher2013-03-291-5/+6
| | | | (Portage version: 2.2.0_alpha169/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)