diff options
Diffstat (limited to 'sci-chemistry/suitename')
-rw-r--r-- | sci-chemistry/suitename/ChangeLog | 10 | ||||
-rw-r--r-- | sci-chemistry/suitename/metadata.xml | 22 | ||||
-rw-r--r-- | sci-chemistry/suitename/suitename-0.3.070628.ebuild | 37 |
3 files changed, 69 insertions, 0 deletions
diff --git a/sci-chemistry/suitename/ChangeLog b/sci-chemistry/suitename/ChangeLog new file mode 100644 index 000000000000..c54690c7d9c4 --- /dev/null +++ b/sci-chemistry/suitename/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/suitename +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/suitename/ChangeLog,v 1.1 2010/07/14 20:15:22 jlec Exp $ + +*suitename-0.3.070628 (14 Jul 2010) + + 14 Jul 2010; Justin Lecher <jlec@gentoo.org> +suitename-0.3.070628.ebuild, + +metadata.xml: + New addition + diff --git a/sci-chemistry/suitename/metadata.xml b/sci-chemistry/suitename/metadata.xml new file mode 100644 index 000000000000..37e91c3ef75f --- /dev/null +++ b/sci-chemistry/suitename/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +<maintainer> + <email>jlec@gentoo.org</email> +</maintainer> +<longdescription> +Suitename is a new C program that supports the ROC RNA Ontology Consortium +consensus RNA backbone nomenclature and conformer-list development (see our RNA +backbone rotamer section. +From dihedral-angle input for a specific RNA structure (usually from Dangle), +Suitename categorizes the RNA backbone geometry of each suite (the +sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging +to one of the 53 defined conformer bins. The output is either a +one-line-per-suite report, or a linear conformer string (as shown below the +image here) in one of several variant formats. Suitename is built into +MolProbity, producing entries in the multi-criterion chart for an RNA model and +also a suitestring file. The Suitename code is made available here for bulk or +individual command-line use. +</longdescription> +</pkgmetadata> diff --git a/sci-chemistry/suitename/suitename-0.3.070628.ebuild b/sci-chemistry/suitename/suitename-0.3.070628.ebuild new file mode 100644 index 000000000000..21ceea4a7006 --- /dev/null +++ b/sci-chemistry/suitename/suitename-0.3.070628.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/suitename/suitename-0.3.070628.ebuild,v 1.1 2010/07/14 20:15:22 jlec Exp $ + +EAPI="3" + +inherit toolchain-funcs + +MY_P="${PN}.${PV}" + +DESCRIPTION="Program that supports the ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development" +HOMEPAGE="http://kinemage.biochem.duke.edu/software/suitename.php" +SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +LICENSE="richardson" +IUSE="" + +S="${WORKDIR}"/${MY_P} + +src_prepare() { + tc-export CC + cp Makefile.linux Makefile || die + sed \ + -e "s:-o:${LDFLAGS} -o:g" \ + -e 's:cc:${CC}:g' \ + -i Makefile || die +} + +src_compile() { + emake CFLAGS="${CFLAGS}" || die +} + +src_install() { + dobin ${PN} || die +} |