diff options
Diffstat (limited to 'sci-chemistry/coot')
| -rw-r--r-- | sci-chemistry/coot/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-chemistry/coot/coot-0.6.ebuild | 150 |
2 files changed, 4 insertions, 151 deletions
diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog index 9d54139b1e15..009e1599c3fd 100644 --- a/sci-chemistry/coot/ChangeLog +++ b/sci-chemistry/coot/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-chemistry/coot # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.33 2011/01/25 12:52:57 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.34 2011/01/31 15:54:52 jlec Exp $ + + 31 Jan 2011; Justin Lecher <jlec@gentoo.org> -coot-0.6.ebuild: + Cleaned old 25 Jan 2011; Christian Faulhammer <fauli@gentoo.org> coot-0.6.1.ebuild: stable x86, bug 352043 diff --git a/sci-chemistry/coot/coot-0.6.ebuild b/sci-chemistry/coot/coot-0.6.ebuild deleted file mode 100644 index f8f730d86177..000000000000 --- a/sci-chemistry/coot/coot-0.6.ebuild +++ /dev/null @@ -1,150 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.ebuild,v 1.8 2010/09/24 13:32:17 jlec Exp $ - -EAPI="3" - -PYTHON_DEPEND="2" - -inherit autotools base python versionator - -MY_S2_PV=$(replace_version_separator 2 - ${PV}) -MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1} -MY_S_P=${MY_S2_P}-${PR/r/revision-} -MY_PV=${PV} -MY_P=${PN}-${MY_PV} - -DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" -HOMEPAGE="http://www.biop.ox.ac.uk/coot/" -SRC_URI=" - http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz - test? ( mirror://gentoo/greg-data-${PV}.tar.gz )" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -SCIDEPS=" - >=sci-libs/ccp4-libs-6.1 - >=sci-libs/clipper-20090520 - >=sci-libs/coot-data-2 - >=sci-libs/gsl-1.3 - sci-libs/mmdb - sci-chemistry/reduce - sci-chemistry/refmac - sci-chemistry/probe" - -XDEPS=" - gnome-base/libgnomecanvas - gnome-base/librsvg - media-libs/libpng - media-libs/freeglut - >=x11-libs/gtk+-2.2 - x11-libs/gtkglext" - -SCHEMEDEPS=" - dev-scheme/net-http - dev-scheme/guile-gui - >=dev-scheme/guile-lib-0.1.6 - dev-scheme/guile-www - ~x11-libs/guile-gtk-2.1" - -RDEPEND=" - ${SCIDEPS} - ${XDEPS} - ${SCHEMEDEPS} - dev-python/pygtk - >=dev-libs/gmp-4.2.2-r2 - >=net-misc/curl-7.19.6 - net-dns/libidn" -DEPEND="${RDEPEND} - dev-lang/swig - test? ( dev-scheme/greg )" - -#S="${WORKDIR}/${MY_P}" -S="${WORKDIR}/${MY_S2_P}" - -pkg_setup() { - python_set_active_version 2 -} - -src_prepare() { - base_src_prepare - - # Link against single-precision fftw - sed -i \ - -e "s:lfftw:lsfftw:g" \ - -e "s:lrfftw:lsrfftw:g" \ - "${S}"/macros/clipper.m4 - - # So we don't need to depend on crazy old gtk and friends - cp "${FILESDIR}"/*.m4 "${S}"/macros/ - - eautoreconf -} - -src_configure() { - # All the --with's are used to activate various parts. - # Yes, this is broken behavior. - econf \ - --includedir='${prefix}/include/coot' \ - --with-gtkcanvas-prefix="${EPREFIX}"/usr \ - --with-clipper-prefix="${EPREFIX}"/usr \ - --with-mmdb-prefix="${EPREFIX}"/usr \ - --with-ssmlib-prefix="${EPREFIX}"/usr \ - --with-gtkgl-prefix="${EPREFIX}"/usr \ - --with-guile \ - --with-python="${EPREFIX}"/usr \ - --with-guile-gtk \ - --with-gtk2 \ - --with-pygtk -} - -src_compile() { - emake || die "emake failed" - python_convert_shebangs $(python_get_version) src/coot_gtk2.py - cp "${S}"/src/coot_gtk2.py python/coot.py || die -} - -src_test() { - mkdir "${T}"/coot_test - - export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" - export COOT_SCHEME_DIR="${S}/scheme/" - export COOT_RESOURCES_FILE="${S}/cootrc" - export COOT_PIXMAPS_DIR="${S}/pixmaps" - export COOT_DATA_DIR="${S}" - export COOT_PYTHON_DIR="${S}/python" - export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}" - export PYTHONHOME="${EPREFIX}"/usr - export CCP4_SCR="${T}"/coot_test - export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/" - - export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data - - cat > command-line-greg.scm <<- EOF - (use-modules (ice-9 greg)) - (set! greg-tools (list "greg-tests")) - (set! greg-debug #t) - (set! greg-verbose 5) - (let ((r (greg-test-run))) - (if r - (coot-real-exit 0) - (coot-real-exit 1))) - EOF - - einfo "Running test with following paths ..." - einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" - einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" - einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE" - einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR" - einfo "COOT_DATA_DIR $COOT_DATA_DIR" - einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR" - einfo "PYTHONPATH $PYTHONPATH" - einfo "PYTHONHOME $PYTHONHOME" - einfo "CCP4_SCR ${CCP4_SCR}" - einfo "CLIBD_MON ${CLIBD_MON}" - - "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die -} |