diff options
Diffstat (limited to 'sci-biology/mafft')
| -rw-r--r-- | sci-biology/mafft/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/mafft/files/digest-mafft-6.240 | 3 | ||||
| -rw-r--r-- | sci-biology/mafft/mafft-5.861-r1.ebuild | 8 | ||||
| -rw-r--r-- | sci-biology/mafft/mafft-6.240.ebuild | 31 |
4 files changed, 44 insertions, 6 deletions
diff --git a/sci-biology/mafft/ChangeLog b/sci-biology/mafft/ChangeLog index a39710e12af1..9685d6731076 100644 --- a/sci-biology/mafft/ChangeLog +++ b/sci-biology/mafft/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/mafft -# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.2 2006/11/09 14:52:49 dberkholz Exp $ +# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.3 2007/10/10 10:23:40 markusle Exp $ + + 08 Oct 2007; Markus Dittrich <markusle@gentoo.org> mafft-5.861-r1.ebuild, +mafft-6.240.ebuild: + Fixed wrongs SRC_URI and HOMEPAGE (see bug #195080). Also bumped + package to the most recent version. *mafft-5.861-r1 (09 Nov 2006) diff --git a/sci-biology/mafft/files/digest-mafft-6.240 b/sci-biology/mafft/files/digest-mafft-6.240 new file mode 100644 index 000000000000..945dc6042d8b --- /dev/null +++ b/sci-biology/mafft/files/digest-mafft-6.240 @@ -0,0 +1,3 @@ +MD5 e603c1dbef35913d46286d5b98b601a3 mafft-6.240-src.tgz 657197 +RMD160 1cb77af7a5a6b9ab818560d9626e746fb7a3b839 mafft-6.240-src.tgz 657197 +SHA256 d0183ab1d6a5e0d1132b95cb917fedb3b6dc16c38d3fde35d7140ecdca555e8f mafft-6.240-src.tgz 657197 diff --git a/sci-biology/mafft/mafft-5.861-r1.ebuild b/sci-biology/mafft/mafft-5.861-r1.ebuild index 83312f64057b..fdf6396c96cb 100644 --- a/sci-biology/mafft/mafft-5.861-r1.ebuild +++ b/sci-biology/mafft/mafft-5.861-r1.ebuild @@ -1,12 +1,12 @@ -# Copyright 1999-2006 Gentoo Foundation +# Copyright 1999-2007 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-5.861-r1.ebuild,v 1.1 2006/11/09 14:52:49 dberkholz Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-5.861-r1.ebuild,v 1.2 2007/10/10 10:23:40 markusle Exp $ inherit toolchain-funcs multilib DESCRIPTION="Multiple sequence alignments using a variety of algorithms" -HOMEPAGE="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/" -SRC_URI="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/${P}-src.tgz" +HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/" +SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}-src.tgz" LICENSE="free-noncomm" SLOT="0" KEYWORDS="~x86" diff --git a/sci-biology/mafft/mafft-6.240.ebuild b/sci-biology/mafft/mafft-6.240.ebuild new file mode 100644 index 000000000000..ed0f76d02d47 --- /dev/null +++ b/sci-biology/mafft/mafft-6.240.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-6.240.ebuild,v 1.1 2007/10/10 10:23:40 markusle Exp $ + +inherit toolchain-funcs multilib + +DESCRIPTION="Multiple sequence alignments using a variety of algorithms" +HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/" +SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}-src.tgz" +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" + +src_compile() { + cd src + emake \ + PREFIX="/usr/$(get_libdir)/${PN}" \ + CC="$(tc-getCC)" \ + CFLAG="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd src + emake PREFIX="${D}usr/$(get_libdir)/${PN}" install || die "install failed" + popd + dodoc readme +} |