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authorOlivier Fisette <ribosome@gentoo.org>2005-07-08 01:42:33 +0000
committerOlivier Fisette <ribosome@gentoo.org>2005-07-08 01:42:33 +0000
commit215f328fa4a56f174d12e76c9ac7deb9bd8f9a08 (patch)
treea0ccfe1beff50c95b6731c04c416bfc3182b4125 /sci-biology
parentStable on sparc (diff)
downloadgentoo-2-215f328fa4a56f174d12e76c9ac7deb9bd8f9a08.tar.gz
gentoo-2-215f328fa4a56f174d12e76c9ac7deb9bd8f9a08.tar.bz2
gentoo-2-215f328fa4a56f174d12e76c9ac7deb9bd8f9a08.zip
New version: 507. Added 506 to x86.
(Portage version: 2.0.51.19)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog8
-rw-r--r--sci-biology/rebase/Manifest12
-rw-r--r--sci-biology/rebase/files/digest-rebase-5071
-rw-r--r--sci-biology/rebase/rebase-506.ebuild4
-rw-r--r--sci-biology/rebase/rebase-507.ebuild39
5 files changed, 56 insertions, 8 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 7b9629d5c6e7..9dbfc910bf7e 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/rebase
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.22 2005/06/26 18:19:10 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.23 2005/07/08 01:42:33 ribosome Exp $
+
+*rebase-507 (08 Jul 2005)
+
+ 08 Jul 2005; Olivier Fisette <ribosome@gentoo.org> rebase-506.ebuild,
+ +rebase-507.ebuild:
+ New version: 507. Added 506 to x86.
26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org> rebase-505.ebuild:
Stable ppc-macos
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 40ab969f4709..22fb7cd706b0 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,10 +1,12 @@
-MD5 490bc17dd60ef5db120f35ebe80f4cb0 ChangeLog 4027
-MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
+MD5 6be4bf0d70171c4fa88a76a2212c6b2a rebase-506.ebuild 1104
MD5 5fa95c2f2ad17343c0eb4b6ca755f356 rebase-503.ebuild 1093
-MD5 09995c6206ec61ffb1b9ab7b1d42b630 rebase-504.ebuild 1101
MD5 3b10133e907390c0f7af6f22e50c3582 rebase-505.ebuild 1100
-MD5 4b39e6bbf2ce2c3e3e01c5392b755ef5 rebase-506.ebuild 1105
-MD5 d6f28d28944c2a7a89f538b5e2f6ca59 files/digest-rebase-504 63
+MD5 4b39e6bbf2ce2c3e3e01c5392b755ef5 rebase-507.ebuild 1105
+MD5 09995c6206ec61ffb1b9ab7b1d42b630 rebase-504.ebuild 1101
+MD5 490bc17dd60ef5db120f35ebe80f4cb0 ChangeLog 4027
+MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
MD5 4dadc55666a0a297406ac775307bfc29 files/digest-rebase-503 63
+MD5 d6f28d28944c2a7a89f538b5e2f6ca59 files/digest-rebase-504 63
MD5 ea8e6db2f49c76188695eded7e22ea33 files/digest-rebase-505 63
MD5 9db4b0bbf4fd2bfaf23f3434ac71e8f5 files/digest-rebase-506 63
+MD5 50cb82dc8445892e84b0858103dbbc74 files/digest-rebase-507 63
diff --git a/sci-biology/rebase/files/digest-rebase-507 b/sci-biology/rebase/files/digest-rebase-507
new file mode 100644
index 000000000000..50243b56cd0b
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-507
@@ -0,0 +1 @@
+MD5 6cbb5e2fd8029c10898e7a35c102b283 rebase-507.tar.bz2 179451
diff --git a/sci-biology/rebase/rebase-506.ebuild b/sci-biology/rebase/rebase-506.ebuild
index eb45926e8fbf..3199e4e72c7f 100644
--- a/sci-biology/rebase/rebase-506.ebuild
+++ b/sci-biology/rebase/rebase-506.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-506.ebuild,v 1.1 2005/06/03 05:04:34 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-506.ebuild,v 1.2 2005/07/08 01:42:33 ribosome Exp $
DESCRIPTION="A restriction enzyme database"
HOMEPAGE="http://rebase.neb.com"
@@ -8,7 +8,7 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+KEYWORDS="x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
diff --git a/sci-biology/rebase/rebase-507.ebuild b/sci-biology/rebase/rebase-507.ebuild
new file mode 100644
index 000000000000..fb6319348319
--- /dev/null
+++ b/sci-biology/rebase/rebase-507.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-507.ebuild,v 1.1 2005/07/08 01:42:33 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+IUSE="emboss minimal"
+# Minimal build keeps only the indexed files (if applicable) and the documentation.
+# The non-indexed database is not installed.
+
+DEPEND="emboss? ( sci-biology/emboss )"
+
+src_compile() {
+ if use emboss; then
+ echo
+ einfo "Indexing ${PN} for usage with EMBOSS."
+ mkdir REBASE
+ EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+ -protofile proto.${PV} || die "Indexing ${PN} failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${PV} proto.${PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/{embossre.enz,embossre.ref,embossre.sup}
+ fi
+}