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| author |   Olivier Fisette <ribosome@gentoo.org> | 2006-06-26 15:47:50 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2006-06-26 15:47:50 +0000 |
| commit | dea6963dfb4e5e7a27c0816ed8c3f31830462689 (patch) | |
| tree | 90238284f2e8f3e64dab2430586ca8c41673b17f /sci-biology/rebase | |
| parent | Stable on sparc (diff) | |
| download | gentoo-2-dea6963dfb4e5e7a27c0816ed8c3f31830462689.tar.gz gentoo-2-dea6963dfb4e5e7a27c0816ed8c3f31830462689.tar.bz2 gentoo-2-dea6963dfb4e5e7a27c0816ed8c3f31830462689.zip | |
New upstream version
(Portage version: 2.1-r1)
Diffstat (limited to 'sci-biology/rebase')
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-606 | 3 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-606.ebuild | 43 |
3 files changed, 52 insertions, 1 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 7ea0bbf07704..5ea9610c1f40 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.65 2006/05/24 20:45:09 hansmi Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.66 2006/06/26 15:47:49 ribosome Exp $ + +*rebase-606 (26 Jun 2006) + + 26 Jun 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-606.ebuild: + New upstream version. 24 May 2006; Michael Hanselmann <hansmi@gentoo.org> rebase-603.ebuild: Stable on ppc. diff --git a/sci-biology/rebase/files/digest-rebase-606 b/sci-biology/rebase/files/digest-rebase-606 new file mode 100644 index 000000000000..5affcf9a02e8 --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-606 @@ -0,0 +1,3 @@ +MD5 e071d9fe97267a63979b35196297d9f1 rebase-606.tar.bz2 183617 +RMD160 7dea5a428a797b359c5bd34c698f093927a94be0 rebase-606.tar.bz2 183617 +SHA256 13ccca9937b7053ddda2f1cdeac88cc39eb5938540507089ff249d30f403244e rebase-606.tar.bz2 183617 diff --git a/sci-biology/rebase/rebase-606.ebuild b/sci-biology/rebase/rebase-606.ebuild new file mode 100644 index 000000000000..caaed56c6774 --- /dev/null +++ b/sci-biology/rebase/rebase-606.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-606.ebuild,v 1.1 2006/06/26 15:47:50 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )" + +src_compile() { + if use emboss; then + echo + einfo "Indexing ${PN} for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing ${PN} failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins embossre.equ || die "Failed to install enzyme prototypes file." + fi +} |